GridImageStack

Semantic name:: https://openminds.om-i.org/types/GridImageStack
Display as:: Grid image stack

Properties

Required:: dataLocation, dimension, pixelSize, z-stepSize
Optional:: additionalRemarks, coordinateFramework, name, numberOfImages, obtainedWith

additionalRemarks

Mention of what deserves additional attention or notice.

schema_specifications

semantic name:: https://openminds.om-i.org/props/additionalRemarks
value type:: string

formatting: text/markdown; multiline
instructions:: Enter any additional remarks concerning this grid image stack.

coordinateFramework

schema_specifications

semantic name:: https://openminds.om-i.org/props/coordinateFramework
value type:: linked object of type

CommonCoordinateFrameworkVersion or CustomCoordinateFramework
instructions:: Add the coordinate space in which this grid image stack exists.

dataLocation

schema_specifications

semantic name:: https://openminds.om-i.org/props/dataLocation
value type:: linked object of type

File or FileBundle
instructions:: Add a reference to the file to which this grid image stack information applies. If the information applies uniformly to a grid image stack file series, a reference to the corresponding file bundle may be provided instead.

dimension

schema_specifications

semantic name:: https://openminds.om-i.org/props/dimension
value type:: integer array (2-2)
instructions:: Enter the common dimension of the consecutive grid image planes (optical sections) in pixels.

name

Word or phrase that constitutes the distinctive designation of a being or thing.

schema_specifications

semantic name:: https://openminds.om-i.org/props/name
value type:: string

formatting: text/plain; singleline
instructions:: Enter a descriptive name of this grid image stack preferably matching the filename.

numberOfImages

schema_specifications

semantic name:: https://openminds.om-i.org/props/numberOfImages
value type:: integer
instructions:: Enter the total number of consecutive grid image planes (optical sections) in this stack (at least two).

obtainedWith

schema_specifications

semantic name:: https://openminds.om-i.org/props/obtainedWith
value type:: linked object of type

ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage or SlicingDeviceUsage
instructions:: Add the used device for obtaining this grid image stack.

pixelSize

schema_specifications

semantic name:: https://openminds.om-i.org/props/pixelSize
value type:: embedded object array (2-2) of type

QuantitativeValue
instructions:: Enter the common physical pixel size for the consecutive grid image planes (optical sections) (in x,y order).

z-stepSize

schema_specifications

semantic name:: https://openminds.om-i.org/props/z-stepSize
value type:: embedded object of type

QuantitativeValue
instructions:: Enter the physical axial distance between consecutive image planes (optical sections) within this grid image stack.