################################ Terminologies: Technique library ################################ Related schema specification: `Technique `_ ------------ ------------ 3DComputerGraphicModeling ------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/3DComputerGraphicModeling :@type: https://openminds.om-i.org/types/Technique :name: 3D computer graphic modeling `BACK TO TOP `_ ------------ 3DPolarizedLightImaging ----------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/3DPolarizedLightImaging :@type: https://openminds.om-i.org/types/Technique :definition: '3D polarized light imaging' (synonym: 3D-PLI) is a 3D reconstruction process of high-resoluted image data originating from polorized light microscopy. :name: 3D polarized light imaging `BACK TO TOP `_ ------------ 3DScanning ---------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/3DScanning :@type: https://openminds.om-i.org/types/Technique :name: 3D scanning `BACK TO TOP `_ ------------ CLARITY_TDE ----------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/CLARITY_TDE :@type: https://openminds.om-i.org/types/Technique :name: CLARITY/TDE `BACK TO TOP `_ ------------ DABStaining ----------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/DABStaining :@type: https://openminds.om-i.org/types/Technique :definition: In a 'DAB staining', the organic compound DAB (3, 3'-diaminobenzidine) is oxidized in presence of peroxidase and hydrogen peroxide resulting in deposition of a brown, alcohol-insoluble precipitate which can be used in immunohistochemical and blotting applications. :name: DAB staining `BACK TO TOP `_ ------------ DAPiStaining ------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/DAPiStaining :@type: https://openminds.om-i.org/types/Technique :definition: A nuclear-specific staining technique where DAPi (4′,6-diamidino-2-phenylindole) is used as a dye. :description: DAPi, or 4′,6-diamidino-2-phenylindole, is a blue fluorescent dye that bind strongly to adenine-thymine (AT) rich regions in DNA. It is used extensively in fluorescence microscopy and can be used on both fixated and living cells. :name: DAPi staining `BACK TO TOP `_ ------------ DNAMethylationAnalysis ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/DNAMethylationAnalysis :@type: https://openminds.om-i.org/types/Technique :definition: A 'DNA methylation analysis' studies chromosomal patterns of DNA or histone modification by methyl groups ([modified from Nature.com](https://www.nature.com/subjects/methylation-analysis)). :name: DNA methylation analysis :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0779582 `BACK TO TOP `_ ------------ DNASequencing ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/DNASequencing :@type: https://openminds.om-i.org/types/Technique :definition: 'DNA sequencing' refers to a group of techniques that are used to determine the order of nucleotides (nucleic acid sequence) in DNA. [adapted from [wikipedia](https://en.wikipedia.org/wiki/DNA_sequencing)] :name: DNA sequencing :preferredOntologyIdentifier: http://purl.obolibrary.org/obo/OBI_0000626 `BACK TO TOP `_ ------------ GolgiStaining ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/GolgiStaining :@type: https://openminds.om-i.org/types/Technique :definition: 'Golgi staining' includes several silver staining techniques in which fixed tissue is impregnated with silver nitrate and potassium dichromate resulting in the complete staining of some nerve cells while other cells are not stained at all. [adapted from InterLex](http://uri.interlex.org/ilx_0104713) :name: Golgi staining :preferredCrossReference: http://uri.neuinfo.org/nif/nifstd/birnlex_2243 :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0104713 `BACK TO TOP `_ ------------ HEStaining ---------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/HEStaining :@type: https://openminds.om-i.org/types/Technique :definition: An 'H&E staining' combines the two histological stains hematoxylin and eosin which highlight a large portion of microscopic anatomy in a tissue. It is therefore the most widely used stain in medical and histopathological diagnosis. :name: H&E staining `BACK TO TOP `_ ------------ HPCSimulation ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/HPCSimulation :@type: https://openminds.om-i.org/types/Technique :name: HPC simulation `BACK TO TOP `_ ------------ HoechstStaining --------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/HoechstStaining :@type: https://openminds.om-i.org/types/Technique :definition: A nuclear-specific staining technique where a Hoechst dye is used. :description: Hoechst dyes are part of a family of blue fluorescent dye that bind to DNA. It acts similarly as DAPi and can also be used on both fixated and living cells. :name: Hoechst staining `BACK TO TOP `_ ------------ NisslStaining ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/NisslStaining :@type: https://openminds.om-i.org/types/Technique :definition: The term 'Nissl staining' refers to various basic dyes (e.g., aniline, thionine, cresyl violet) that selectively label negatively charged molecules (e.g., DNA, RNA) and are therefore typically used to highlight important structural features of cell bodies. :name: Nissl staining `BACK TO TOP `_ ------------ RNASequencing ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/RNASequencing :@type: https://openminds.om-i.org/types/Technique :definition: 'RNA sequencing' refers to a group of techniques that are used to (directly or indirectly) determine the order of nucleotides (nucleic acid sequence) in RNA. :name: RNA sequencing :preferredOntologyIdentifier: http://purl.obolibrary.org/obo/OBI_0001177 `BACK TO TOP `_ ------------ RamanSpectroscopy ----------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/RamanSpectroscopy :@type: https://openminds.om-i.org/types/Technique :definition: A spectroscopic technique where scattered light is used to measure the vibrational energy modes of a sample. It relies upon inelastic scattering of photons (Raman scattering) and can provide both chemical and structural information. :name: Raman spectroscopy `BACK TO TOP `_ ------------ SDSDigestedFreezeFractureReplicaLabeling ---------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/SDSDigestedFreezeFractureReplicaLabeling :@type: https://openminds.om-i.org/types/Technique :name: SDS-digested freeze-fracture replica labeling `BACK TO TOP `_ ------------ SWITCHImmunohistochemistry -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/SWITCHImmunohistochemistry :@type: https://openminds.om-i.org/types/Technique :name: SWITCH immunohistochemistry `BACK TO TOP `_ ------------ TDEClearing ----------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/TDEClearing :@type: https://openminds.om-i.org/types/Technique :name: TDE clearing `BACK TO TOP `_ ------------ TimmsStaining ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/TimmsStaining :@type: https://openminds.om-i.org/types/Technique :definition: A technique used to selectively visualize a variety of metals (e.g. zinc, copper, iron) in biological tissue based on sulphide-precipitation of metals in the tissue. :description: The principle of this technique is that metals in the tissue can be transformed histochemically to metal sulphide. Subsequently, metal sulphide catalyze the reduction of silver ions by a reducing agent to metallic grains that are visible under a light or electron microscope. :name: Timm's staining :preferredCrossReference: http://uri.neuinfo.org/nif/nifstd/birnlex_2248 :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0107265 `BACK TO TOP `_ ------------ activityModulationTechnique --------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/activityModulationTechnique :@type: https://openminds.om-i.org/types/Technique :name: activity modulation technique `BACK TO TOP `_ ------------ anaesthesiaAdministration ------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/anaesthesiaAdministration :@type: https://openminds.om-i.org/types/Technique :name: anaesthesia administration `BACK TO TOP `_ ------------ anaesthesiaMonitoring --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/anaesthesiaMonitoring :@type: https://openminds.om-i.org/types/Technique :name: anaesthesia monitoring `BACK TO TOP `_ ------------ anaesthesiaTechnique -------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/anaesthesiaTechnique :@type: https://openminds.om-i.org/types/Technique :name: anaesthesia technique `BACK TO TOP `_ ------------ angiography ----------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/angiography :@type: https://openminds.om-i.org/types/Technique :definition: Imaging technique for anatomical and structural details of the vascular system [adapted from [National Library of Medicine](https://www.ncbi.nlm.nih.gov/books/NBK557477/)]. :name: angiography :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739420 `BACK TO TOP `_ ------------ anterogradeTracing ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/anterogradeTracing :@type: https://openminds.om-i.org/types/Technique :definition: Anterograde tracing is a technique used to trace axonal projections from their source (the cell body or soma) to their point of termination (the synapse). :description: Anterograde tracers are taken up by neuronal cell bodies at the injection site and travel to the axon terminals. Anterograde tracing techniques allow for a detailed assessment of neuronal connections between a target population of neurons and their outputs throughout the nervous system. :name: anterograde tracing `BACK TO TOP `_ ------------ autoradiography --------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/autoradiography :@type: https://openminds.om-i.org/types/Technique :definition: 'Autoradiography' is a photography technique that creates images of a radioactive source (e.g., molecules or fragments of molecules that have been radioactively labeled) by the direct exposure to an imaging media (e.g., X-ray film or nuclear emulsion) :name: autoradiography :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0439300 `BACK TO TOP `_ ------------ avidinBiotinComplexStaining --------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/avidinBiotinComplexStaining :@type: https://openminds.om-i.org/types/Technique :name: avidin-biotin complex staining `BACK TO TOP `_ ------------ beta-galactosidaseStaining -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/beta-galactosidaseStaining :@type: https://openminds.om-i.org/types/Technique :name: beta-galactosidase staining `BACK TO TOP `_ ------------ biocytinStaining ---------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/biocytinStaining :@type: https://openminds.om-i.org/types/Technique :definition: In 'biocytin staining' the chemical compound biocytin is used to highlight morphological details of nerve cells. :description: Biocytin staining is a technique commonly used in combination with intracellular electrophysiology for post-hoc recovery of morphological details of the studied neurons. For this, the chemical compound biocytin is included in the electrode in order to fill the studied cell. It allows for the visualisation of the dendritic arborization and the regions targeted by the axons of the studied neurons. :name: biocytin staining `BACK TO TOP `_ ------------ bloodSampling ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/bloodSampling :@type: https://openminds.om-i.org/types/Technique :definition: 'Blood sampling' is the process of obtaining blood from a body for purpose of medical diagnosis and/or evaluation of an indication for treatment, further medical tests or other procedures. :name: blood sampling :preferredOntologyIdentifier: http://purl.obolibrary.org/obo/OBI_1110095 `BACK TO TOP `_ ------------ brightfieldMicroscopy --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/brightfieldMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Brightfield microscopy is an optical microscopy techniques, in which illumination light is transmitted through the sample and the contrast is generated by the absorption of light in dense areas of the specimen. :name: brightfield microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739719 `BACK TO TOP `_ ------------ calciumImaging -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/calciumImaging :@type: https://openminds.om-i.org/types/Technique :name: calcium imaging `BACK TO TOP `_ ------------ callosotomy ----------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/callosotomy :@type: https://openminds.om-i.org/types/Technique :name: callosotomy `BACK TO TOP `_ ------------ cellAttachedPatchClamp ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/cellAttachedPatchClamp :@type: https://openminds.om-i.org/types/Technique :definition: 'Cell-attached patch clamp' is an intracellular electrophysiology technique that fully preserves the intracellular integrity by forming a megaohm or gigaohm seal, leaving the cell membrane intact. :description: Cell-attached patch clamp is a patch clamp recording technique used in electrophysiology in which the intracellular integrity of the cell is preserved. Patches are formed using either a ‘loose seal’ (mega ohm resistance) or a ‘tight seal’ (giga ohm resistance) without rupturing the cell membrane. A loose seal is used for recording action potential currents, whereas a tight seal is required for evoking action potentials in the attached cell and for recording resting and synaptic potentials. :name: cell attached patch clamp `BACK TO TOP `_ ------------ coherentAntiStokesRamanSpectroscopy ----------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/coherentAntiStokesRamanSpectroscopy :@type: https://openminds.om-i.org/types/Technique :definition: A nonlinear Raman spectroscopy technique that employs multiple photons to address molecular vibrations, and produces a coherent signal. It uses a Stokes frequency stimulation beam and an anti-Stokes frequency beam is observed [adapted from [Wikipedia](https://en.wikipedia.org/wiki/Coherent_anti-Stokes_Raman_spectroscopy)]. :name: coherent anti-Stokes Raman spectroscopy `BACK TO TOP `_ ------------ coherentStokesRamanSpectroscopy ------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/coherentStokesRamanSpectroscopy :@type: https://openminds.om-i.org/types/Technique :definition: A nonlinear Raman spectroscopy technique that employs multiple photons to address molecular vibrations, and produces a coherent signal. It uses an anti-Stokes frequency stimulation beam and a Stokes frequency beam is observed [adapted from [Wikipedia](https://en.wikipedia.org/wiki/Coherent_anti-Stokes_Raman_spectroscopy)]. :name: coherent Stokes Raman spectroscopy `BACK TO TOP `_ ------------ computerTomography ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/computerTomography :@type: https://openminds.om-i.org/types/Technique :definition: 'Computer tomogoraphy' is a noninvasive medical imaging technique where a computer generates multiple X-ray scans to obtain detailed internal 3D image of the body. :name: computer tomography `BACK TO TOP `_ ------------ confocalMicroscopy ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/confocalMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Confocal microscopy is a specialized fluorescence microscopy technique that uses pinholes to reject out-of-focus light. :description: Confocal microscopy focuses light onto a defined spot at a specific depth within a fluorescent sample to eliminate out-of-focus glare, and increase resolution and contrast in the micrographs. :name: confocal microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739731 `BACK TO TOP `_ ------------ contrastAgentAdministration --------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/contrastAgentAdministration :@type: https://openminds.om-i.org/types/Technique :definition: A 'contrast agent administration' is a (typically) oral or intraveneous administration of a chemical compound to improve the visibility of internal body structures of a subject in a subsequent imaging technique. :name: contrast agent administration `BACK TO TOP `_ ------------ contrastEnhancement ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/contrastEnhancement :@type: https://openminds.om-i.org/types/Technique :name: contrast enhancement `BACK TO TOP `_ ------------ cortico-corticalEvokedPotentialMapping -------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/cortico-corticalEvokedPotentialMapping :@type: https://openminds.om-i.org/types/Technique :definition: Cortico-cortical evoked potential (CCEP) mapping is used to identify the effective connectivity between distinct neuronal populations based on multiple CCEP measurements across (parts of) the brain in response to direct electrical stimulation (typically at various locations). :name: cortico-cortical evoked potential mapping `BACK TO TOP `_ ------------ craniotomy ---------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/craniotomy :@type: https://openminds.om-i.org/types/Technique :name: craniotomy `BACK TO TOP `_ ------------ cryosectioning -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/cryosectioning :@type: https://openminds.om-i.org/types/Technique :definition: Cutting of specimen in cryo/freezing conditions typically resulting in micromillimeter thin slices. :name: cryosectioning `BACK TO TOP `_ ------------ currentClamp ------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/currentClamp :@type: https://openminds.om-i.org/types/Technique :definition: Current clamp is a technique in which the amount of current injected into the cell is controlled, which allows for the detection of changes in the transmembrane voltage resulting from ion channel activity. :name: current clamp `BACK TO TOP `_ ------------ darkfieldMicroscopy ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/darkfieldMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Darkfield microscopy is an optical microscopy technique in which illumination light is transmitted through the sample so that it does not directly enter the optics and contrast is generated by the differential scattering of light within the specimen. :description: Darkfield microscopy is an optical microscopy technique that generates contrast by differentially filtering scatter and unscattered light. Specifically it transmits scattered light and blocks unscattered light. The effect is to make the areas of a transparent sample that scatter light appear brighter than those that do not scatter light. A dark background is used (i.e. the light source is not directly behind the sample in the optical path) so that unscattered light does not overwhelm the scattered light. :name: darkfield microscopy `BACK TO TOP `_ ------------ differentialInterferenceContrastMicroscopy ------------------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/differentialInterferenceContrastMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: An optical microscopy technique, used to enhance the contrast in unstained, transparent samples [taken from [Wikipedia](https://en.wikipedia.org/wiki/Differential_interference_contrast_microscopy)]. :name: differential interference contrast microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739494 `BACK TO TOP `_ ------------ diffusionFixationTechnique -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/diffusionFixationTechnique :@type: https://openminds.om-i.org/types/Technique :definition: Diffusion fixation is a fixation technique to preserve specimen permanently as faithfully as possible compared to the living state by submerging specimen in a fixative. :name: diffusion fixation technique `BACK TO TOP `_ ------------ diffusionSpectrumMagneticResonanceImaging ----------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/diffusionSpectrumMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: Advanced magnetic resonance imaging (MRI) and image processing technique that enhances the contrast of fiber crossings and complex intravoxel fiber orientation distributions [[Zhang et al., 2018](https://doi.org/10.1371/journal.pone.0203271), [Wedeen et al., 2008](https://doi.org/10.1016/j.neuroimage.2008.03.036), [Wedeen et al., 2000](https://cds.ismrm.org/ismrm-2000/PDF1/0082.pdf)]. :name: diffusion spectrum magnetic resonance imaging `BACK TO TOP `_ ------------ diffusionTensorImaging ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/diffusionTensorImaging :@type: https://openminds.om-i.org/types/Technique :name: diffusion tensor imaging `BACK TO TOP `_ ------------ diffusionWeightedImaging ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/diffusionWeightedImaging :@type: https://openminds.om-i.org/types/Technique :name: diffusion-weighted imaging `BACK TO TOP `_ ------------ dualViewInvertedSelectivePlaneIlluminationMicroscopy ---------------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/dualViewInvertedSelectivePlaneIlluminationMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Dual-view inverted selective plane illumination microscopy is a specialized light sheet microscopy technique that allows for dual views of the samples while mounted on an inverted microscope. :name: dual-view inverted selective plane illumination microscopy `BACK TO TOP `_ ------------ electrocardiography ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electrocardiography :@type: https://openminds.om-i.org/types/Technique :definition: Electrocardiography is a non-invasive technique used to record the electrical activity of a heart using electrodes placed on the skin. [adapted from [Wikipedia](https://en.wikipedia.org/wiki/Electrocardiography)] :name: electrocardiography `BACK TO TOP `_ ------------ electrocorticography -------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electrocorticography :@type: https://openminds.om-i.org/types/Technique :definition: 'Electrocorticography', short ECoG, is an intracranial electroencephalography technique in which electrodes are placed (subdural or epidural) on the exposed surface of the brain to record electrical activity from the cerebral cortex. :name: electrocorticography `BACK TO TOP `_ ------------ electroencephalography ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electroencephalography :@type: https://openminds.om-i.org/types/Technique :name: electroencephalography `BACK TO TOP `_ ------------ electromyography ---------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electromyography :@type: https://openminds.om-i.org/types/Technique :name: electromyography `BACK TO TOP `_ ------------ electronMicroscopy ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electronMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Electron microscopy describes any microscopy technique that uses electrons to generate contrast. :name: electron microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739513 `BACK TO TOP `_ ------------ electronTomography ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electronTomography :@type: https://openminds.om-i.org/types/Technique :definition: Electron tomography is a microscopy technique that takes a series of images of a thick sample at different angles (tilts) so that tomography can be applied to increase the resolution of the ticker sample. :name: electron tomography :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0512939 `BACK TO TOP `_ ------------ electrooculography ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electrooculography :@type: https://openminds.om-i.org/types/Technique :name: electrooculography `BACK TO TOP `_ ------------ electroporation --------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/electroporation :@type: https://openminds.om-i.org/types/Technique :definition: A microbiology technique in which an electrical field is applied to cells in order to increase the permeability of the cell membrane. :description: 'Electroporation' is a process in which a significant increase in the electrical conductivity and permeability of the cell plasma membrane is caused by an externally applied electrical field. It is usually used in molecular biology as a way of introducing some substance into a cell, such as loading it with a molecular probe, a drug that can change the cell's function, or a piece of coding DNA. :name: electroporation :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739748 `BACK TO TOP `_ ------------ enzymeLinkedImmunosorbentAssay ------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/enzymeLinkedImmunosorbentAssay :@type: https://openminds.om-i.org/types/Technique :definition: The 'enzyme-linked immunosorbent assay' is a commonly used analytical biochemistry assay for the quantitative determination of antibodies, first described by [Engvall and Perlmann (1972)](https://www.jimmunol.org/content/109/1/129.abstract). [adapted from [wikipedia](https://en.wikipedia.org/wiki/ELISA)] :description: This immunoassay utilizes an antibody labeled with an enzyme marker such as horseradish peroxidase. While either the enzyme or the antibody is bound to an immunosorbent substrate, they both retain their biologic activity; the change in enzyme activity as a result of the enzyme-antibody-antigen reaction is proportional to the concentration of the antigen and can be measured spectrophotometrically or with the naked eye. Many variations of the method have been developed. :name: enzyme-linked immunosorbent assay :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0007526 `BACK TO TOP `_ ------------ epidermalElectrophysiologyTechnique ----------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/epidermalElectrophysiologyTechnique :@type: https://openminds.om-i.org/types/Technique :definition: The term 'epidermal electrophysiology technique' describes a subclass of non-invasive electrophysiology techniques where one or several electrodes are placed on the outermost cell layer of an organism (epidermis) to measure electrical properties. :name: epidermal electrophysiology technique `BACK TO TOP `_ ------------ epiduralElectrocorticography ---------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/epiduralElectrocorticography :@type: https://openminds.om-i.org/types/Technique :name: epidural electrocorticography `BACK TO TOP `_ ------------ epifluorescentMicroscopy ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/epifluorescentMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Epifluorescent microscopy comprises all widefield microscopy techniques in which fluorescent molecules of an entire sample are excited through a permanent exposure of a light source of a specific wavelength. :name: epifluorescent microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739632 `BACK TO TOP `_ ------------ extracellularElectrophysiology ------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/extracellularElectrophysiology :@type: https://openminds.om-i.org/types/Technique :definition: In 'extracellular electrophysiology' electrodes are inserted into living tissue, but remain outside the cells in the extracellular environment to measure or stimulate electrical activity coming from adjacent cells, usually neurons. :name: extracellular electrophysiology `BACK TO TOP `_ ------------ eyeMovementTracking ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/eyeMovementTracking :@type: https://openminds.om-i.org/types/Technique :definition: 'Eye movement tracking' refers to a group of techniques used to record the eye movement and/or position of a living specimen over a given period of time. :name: eye movement tracking :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0493574 `BACK TO TOP `_ ------------ fixationTechnique ----------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/fixationTechnique :@type: https://openminds.om-i.org/types/Technique :definition: Fixation is a technique to preserve specimen permanently as faithfully as possible compared to the living state. :description: Fixation is a two-step process in which 1) all normal life functions are terminated and 2) the structure of the tissue is stabilized (preserved). The fixation of tissue can be achieved by chemical or physical (e.g. heating, freezing) means. :name: fixation technique :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739717 `BACK TO TOP `_ ------------ fluorescenceMicroscopy ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/fluorescenceMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Fluorescence microscopy comprises any type of microscopy where the specimen can be made to fluoresce (emit energy as visible light), typically by illuminating it with light of specific wavelengths. :name: fluorescence microscopy :preferredOntologyIdentifier: http://purl.obolibrary.org/obo/CHMO_0000087 `BACK TO TOP `_ ------------ focusedIonBeamScanningElectronMicroscopy ---------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/focusedIonBeamScanningElectronMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Focused ion beam scanning electron microscopy is a serial section scanning electron microscopy technique where a focused ion beam is used to ablate the surface of a specimen. :name: focused ion beam scanning electron microscopy :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739434 `BACK TO TOP `_ ------------ functionalMagneticResonanceImaging ---------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/functionalMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that generates multiple images over time of some physiological processes of a specimen. :name: functional magnetic resonance imaging `BACK TO TOP `_ ------------ geneExpressionMeasurement ------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/geneExpressionMeasurement :@type: https://openminds.om-i.org/types/Technique :name: gene expression measurement `BACK TO TOP `_ ------------ geneKnockin ----------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/geneKnockin :@type: https://openminds.om-i.org/types/Technique :name: gene knockin `BACK TO TOP `_ ------------ geneKnockout ------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/geneKnockout :@type: https://openminds.om-i.org/types/Technique :name: gene knockout `BACK TO TOP `_ ------------ genomeWideAssociationStudy -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/genomeWideAssociationStudy :@type: https://openminds.om-i.org/types/Technique :definition: A 'genome-wide association study' is an analysis technique comparing the allele frequencies of all available (or a whole genome representative set of) polymorphic markers in unrelated individuals with a specific symptom or disease condition, and those of healthy controls to identify markers associated with a specific disease or condition. :name: genome-wide association study :preferredCrossReference: https://knowledge-space.org/wiki/NLXINV:1005075#genome-association-studies :preferredOntologyIdentifier: http://edamontology.org/topic_3517 `BACK TO TOP `_ ------------ heavyMetalNegativeStaining -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/heavyMetalNegativeStaining :@type: https://openminds.om-i.org/types/Technique :definition: In a 'heavy metal negative staining', a thin and amorphous film of heavy metal salts (e.g. uranyl acetate) is applied on a sample to reveal its structural details for electron microscopy. :name: heavy metal negative staining `BACK TO TOP `_ ------------ high-resolutionScanning ----------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/high-resolutionScanning :@type: https://openminds.om-i.org/types/Technique :name: high-resolution scanning `BACK TO TOP `_ ------------ high-speedVideoRecording ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/high-speedVideoRecording :@type: https://openminds.om-i.org/types/Technique :name: high-speed video recording `BACK TO TOP `_ ------------ highDensityElectroencephalography --------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/highDensityElectroencephalography :@type: https://openminds.om-i.org/types/Technique :name: high-density electroencephalography `BACK TO TOP `_ ------------ highFieldFunctionalMagneticResonanceImaging ------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/highFieldFunctionalMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that generates multiple images over time of some physiological processes of a specimen typically employing a magnetic field strength of 3 Tesla (or higher but below 7 Tesla). :name: high-field functional magnetic resonance imaging `BACK TO TOP `_ ------------ highFieldMagneticResonanceImaging --------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/highFieldMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: Any medical imaging technique that typically uses a magnetic field strength of 3 Tesla (or higher but below 7 Tesla) to generate images of a specimen based on the principle of nuclear magnetic resonance. :name: high-field magnetic resonance imaging `BACK TO TOP `_ ------------ highFieldStructuralMagneticResonanceImaging ------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/highFieldStructuralMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that typically uses a magnetic field strength of 3 Tesla (or higher but below 7 Tesla) to generate images with static information of the scanned body. :name: high-field structural magnetic resonance imaging `BACK TO TOP `_ ------------ highThroughputScanning ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/highThroughputScanning :@type: https://openminds.om-i.org/types/Technique :definition: 'High-throughput scanning' is a technique for automatic creation of analog or digital images of a large number of samples. :name: high-throughput scanning `BACK TO TOP `_ ------------ histochemistry -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/histochemistry :@type: https://openminds.om-i.org/types/Technique :name: histochemistry `BACK TO TOP `_ ------------ immunohistochemistry -------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/immunohistochemistry :@type: https://openminds.om-i.org/types/Technique :definition: In 'immunohistochemistry' antigens or haptens are detected and visualized in cells of a tissue sections by exploiting the principle of antibodies binding specifically to antigens in biological tissues. :name: immunohistochemistry `BACK TO TOP `_ ------------ immunoprecipitation ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/immunoprecipitation :@type: https://openminds.om-i.org/types/Technique :name: immunoprecipitation `BACK TO TOP `_ ------------ implantSurgery -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/implantSurgery :@type: https://openminds.om-i.org/types/Technique :name: implant surgery `BACK TO TOP `_ ------------ inSituHybridisation ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/inSituHybridisation :@type: https://openminds.om-i.org/types/Technique :name: in situ hybridisation `BACK TO TOP `_ ------------ infraredDifferentialInterferenceContrastVideoMicroscopy ------------------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/infraredDifferentialInterferenceContrastVideoMicroscopy :@type: https://openminds.om-i.org/types/Technique :name: infrared differential interference contrast video microscopy :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739494 `BACK TO TOP `_ ------------ injection --------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/injection :@type: https://openminds.om-i.org/types/Technique :name: injection `BACK TO TOP `_ ------------ intracellularElectrophysiology ------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/intracellularElectrophysiology :@type: https://openminds.om-i.org/types/Technique :definition: A technique used to measure electrical properties of a single cell, e.g. a neuron. :description: 'Intracellular electrophysiology' describes a group of techniques used to measure with precision the voltage across, or electrical currents passing through, neuronal or other cellular membranes by inserting an electrode inside the neuron. :name: intracellular electrophysiology :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739521 `BACK TO TOP `_ ------------ intracellularInjection ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/intracellularInjection :@type: https://openminds.om-i.org/types/Technique :name: intracellular injection `BACK TO TOP `_ ------------ intracranialElectroencephalography ---------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/intracranialElectroencephalography :@type: https://openminds.om-i.org/types/Technique :name: intracranial electroencephalography `BACK TO TOP `_ ------------ intraperitonealInjection ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/intraperitonealInjection :@type: https://openminds.om-i.org/types/Technique :definition: An 'intraperitoneal injection' is the administration of a substance into the peritoneum (abdominal cavity) via a needle or tube. :name: intraperitoneal injection `BACK TO TOP `_ ------------ intravenousInjection -------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/intravenousInjection :@type: https://openminds.om-i.org/types/Technique :definition: An 'intravenous injection' is the administration of a substance into a vein or veins via a needle or tube. :name: intravenous injection `BACK TO TOP `_ ------------ iontophoresis ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/iontophoresis :@type: https://openminds.om-i.org/types/Technique :name: iontophoresis `BACK TO TOP `_ ------------ iontophoreticMicroinjection --------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/iontophoreticMicroinjection :@type: https://openminds.om-i.org/types/Technique :name: iontophoretic microinjection `BACK TO TOP `_ ------------ lightMicroscopy --------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/lightMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Light microscopy, also referred to as optical microscopy, comprises any type of microscopy technique that uses visible light to generate magnified images of small objects. :name: light microscopy :preferredOntologyIdentifier: http://edamontology.org/topic_3385 `BACK TO TOP `_ ------------ lightSheetFluorescenceMicroscopy -------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/lightSheetFluorescenceMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Lightsheet fluorescence microscopy is a fluorescence microscopy technique that uses a thin sheet of light to excite only fluorophores within the plane of illumination. :name: light sheet fluorescence microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739693 `BACK TO TOP `_ ------------ magneticResonanceImaging ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/magneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: Any medical imaging technique that uses strong magnetic fields, magnetic field gradients, and radio waves to generate images of a specimen based on the principle of nuclear magnetic resonance. :name: magnetic resonance imaging :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0741208 `BACK TO TOP `_ ------------ magneticResonanceSpectroscopy ----------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/magneticResonanceSpectroscopy :@type: https://openminds.om-i.org/types/Technique :name: magnetic resonance spectroscopy `BACK TO TOP `_ ------------ magnetizationTransferImaging ---------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/magnetizationTransferImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that exploits the contrast between tissues where 1H protons are (i) bound to macromolecules, (ii) in free water, and (iii) in water of hydration layer between macromolecules and free water. :name: magnetization transfer imaging `BACK TO TOP `_ ------------ magnetoencephalography ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/magnetoencephalography :@type: https://openminds.om-i.org/types/Technique :definition: 'Magnetoencephalography' is a noninvasive neuroimaging technique for studying brain activity by recording magnetic fields produced by electrical currents occurring naturally in the brain, using very sensitive magnetometers. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Magnetoencephalography)] :name: magnetoencephalography :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0741209 `BACK TO TOP `_ ------------ massSpectrometry ---------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/massSpectrometry :@type: https://openminds.om-i.org/types/Technique :name: mass spectrometry `BACK TO TOP `_ ------------ microComputedTomography ----------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/microComputedTomography :@type: https://openminds.om-i.org/types/Technique :definition: 'Micro computed tomography' uses X-rays to create cross-sections of physical objects with resolution in the micrometer range that can be used to recreate 3-dimensional models [adapted from [Wikipedia](https://en.wikipedia.org/wiki/X-ray_microtomography)]. :name: micro computed tomography :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0514122 `BACK TO TOP `_ ------------ microtomeSectioning ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/microtomeSectioning :@type: https://openminds.om-i.org/types/Technique :definition: A technique used to cut specimen in thin slices using a microtome. :description: The microtome cutting thickness can range between 50 nanometer and 100 micrometer. :name: microtome sectioning :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739422 `BACK TO TOP `_ ------------ motionCapture ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/motionCapture :@type: https://openminds.om-i.org/types/Technique :definition: 'Motion capture' refers to a group of techniques used to measure the movement and/or position of an object, specimen, or anatomical parts of a specimen over a given period of time. :name: motion capture `BACK TO TOP `_ ------------ multi-compartmentModeling ------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/multi-compartmentModeling :@type: https://openminds.om-i.org/types/Technique :name: multi-compartment modeling `BACK TO TOP `_ ------------ multiElectrodeExtracellularElectrophysiology -------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/multiElectrodeExtracellularElectrophysiology :@type: https://openminds.om-i.org/types/Technique :name: multi-electrode extracellular electrophysiology `BACK TO TOP `_ ------------ multiPhotonFluorescenceMicroscopy --------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/multiPhotonFluorescenceMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Multi photon fluorescence microscopy is a fluorescence microscopy technique for living tissue which is based on the simultaneous excitation by two or more photons with longer wavelength than the emitted light. :name: multi photon fluorescence microscopy `BACK TO TOP `_ ------------ multipleWholeCellPatchClamp --------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/multipleWholeCellPatchClamp :@type: https://openminds.om-i.org/types/Technique :name: multiple whole cell patch clamp `BACK TO TOP `_ ------------ myelinStaining -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/myelinStaining :@type: https://openminds.om-i.org/types/Technique :definition: A technique used to selectively alter the appearance of myelin (sheaths) that surround the nerve cell axons. :name: myelin staining :preferredCrossReference: http://uri.neuinfo.org/nif/nifstd/birnlex_2248 :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0107265 `BACK TO TOP `_ ------------ myelinWaterImaging ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/myelinWaterImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that provides in vivo measurement of myelin. :name: myelin water imaging `BACK TO TOP `_ ------------ nearInfraredSpectroscopy ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/nearInfraredSpectroscopy :@type: https://openminds.om-i.org/types/Technique :definition: A noninvasive technique that uses the differential absorption properties of hemoglobin and myoglobin to evaluate tissue oxygenation and indirectly can measure regional hemodynamics and blood flow [taken from [Interlex](http://uri.interlex.org/base/ilx_0488397)]. :name: near infrared spectroscopy :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0028692 `BACK TO TOP `_ ------------ neuromorphicSimulation ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/neuromorphicSimulation :@type: https://openminds.om-i.org/types/Technique :name: neuromorphic simulation `BACK TO TOP `_ ------------ nonlinearOpticalMicroscopy -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/nonlinearOpticalMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Microscopic imaging techniques that utilize nonlinear responses of light-matter interactions which occur with high-intensity illumination, such as from lasers, and specialized light signal detection instrumentation to produce images without the need for dyes or fluorescent labels. [taken from [Interlex](http://uri.interlex.org/base/ilx_0436517)]. :name: nonlinear optical microscopy :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M000623844 `BACK TO TOP `_ ------------ nucleicAcidExtraction --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/nucleicAcidExtraction :@type: https://openminds.om-i.org/types/Technique :definition: 'Nucleic acid extraction' refers to a group of techniques that all separate nucleic acids from proteins and lipids using three major processes: isolation, purification, and concentration. :name: nucleic acid extraction `BACK TO TOP `_ ------------ opticalCoherenceTomography -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/opticalCoherenceTomography :@type: https://openminds.om-i.org/types/Technique :definition: Imaging technique that combines interferometry with short-coherence-length light to obtain micrometer-level depth resolution. Transverse scanning of the light beam is used to form two- and three-dimensional images, reflected from biological tissue or scattering media [Adapted from [Wikipedia](https://en.wikipedia.org/wiki/Optical_coherence_tomography)]. :name: optical coherence tomography `BACK TO TOP `_ ------------ opticalCoherenceTomographyAngiography ------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/opticalCoherenceTomographyAngiography :@type: https://openminds.om-i.org/types/Technique :definition: Imaging technique that uses laser light reflectance of the surface from moving red blood cells to create detailed images of blood vessels over time [Adapted from [EyeWiki](https://eyewiki.aao.org/Optical_Coherence_Tomography_Angiography)]. :name: optical coherence tomography angiography `BACK TO TOP `_ ------------ optogeneticInhibition --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/optogeneticInhibition :@type: https://openminds.om-i.org/types/Technique :definition: Optogenetic inhibition is a genetic technique in which the activity of specific neuron populations is decreased using light of a particular wavelength. This can be achieved by expressing light-sensitive ion channels, pumps or enzymes specifically in the target neurons. :name: optogenetic inhibition `BACK TO TOP `_ ------------ oralAdministration ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/oralAdministration :@type: https://openminds.om-i.org/types/Technique :definition: In an 'oral administration' a substance is taken through the mouth. :name: oral administration `BACK TO TOP `_ ------------ organExtraction --------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/organExtraction :@type: https://openminds.om-i.org/types/Technique :name: organ extraction `BACK TO TOP `_ ------------ patchClamp ---------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/patchClamp :@type: https://openminds.om-i.org/types/Technique :name: patch clamp `BACK TO TOP `_ ------------ perfusionFixationTechnique -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/perfusionFixationTechnique :@type: https://openminds.om-i.org/types/Technique :definition: Perfusion fixation is a fixation technique to preserve specimen permanently as faithfully as possible compared to the living state by using the vascular system to distribute fixatives throughout the tissue. :name: perfusion fixation technique `BACK TO TOP `_ ------------ perfusionTechnique ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/perfusionTechnique :@type: https://openminds.om-i.org/types/Technique :definition: Perfusion is a technique to distribute fluid through the circulatory system or lymphatic system to an organ or a tissue. :name: perfusion technique :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739602 `BACK TO TOP `_ ------------ perturbationalComplexityIndexMeasurement ---------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/perturbationalComplexityIndexMeasurement :@type: https://openminds.om-i.org/types/Technique :name: perturbational complexity index measurement `BACK TO TOP `_ ------------ phaseContrastMicroscopy ----------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/phaseContrastMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Optical microscopy technique that converts phase shifts in light passing through a transparent specimen to brightness changes in the image [taken from [Wikipedia](https://en.wikipedia.org/wiki/Phase-contrast_microscopy)]. :name: phase contrast microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739510 `BACK TO TOP `_ ------------ phaseContrastXRayComputedTomography ----------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/phaseContrastXRayComputedTomography :@type: https://openminds.om-i.org/types/Technique :definition: 'Phase-contrast x-ray computed tomography' is a non-invasive x-ray imaging technique for three-dimensional observation of organic matter without application of a contrast medium ([Momose, Takeda, and Itai (1995)](https://doi.org/10.1063/1.1145931)). :name: phase‐contrast x‐ray computed tomography `BACK TO TOP `_ ------------ phaseContrastXRayImaging ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/phaseContrastXRayImaging :@type: https://openminds.om-i.org/types/Technique :definition: 'Phase-contrast x-ray imaging' is a general term for different x-ray techniques that use changes in the phase of an x-ray beam passing through an object leading to images with improved soft tissue contrast without the application of a contrast medium. (adapted from [Wikipedia](https://en.wikipedia.org/wiki/Phase-contrast_X-ray_imaging)) :name: phase-contrast x-ray imaging `BACK TO TOP `_ ------------ photoactivation --------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/photoactivation :@type: https://openminds.om-i.org/types/Technique :name: photoactivation `BACK TO TOP `_ ------------ photoinactivation ----------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/photoinactivation :@type: https://openminds.om-i.org/types/Technique :name: photoinactivation `BACK TO TOP `_ ------------ photoplethysmography -------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/photoplethysmography :@type: https://openminds.om-i.org/types/Technique :definition: Photoplethysmography is a non-invasive technique to optically detect blood volume changes in the micro-vascular bed of tissue by measuring the transmissive absorption and/or the reflection of light by the skin. :name: photoplethysmography :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0026056 `BACK TO TOP `_ ------------ polarizedLightMicroscopy ------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/polarizedLightMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Polarized light microscopy comprises all optical microscopy techniques involving polarized light. :name: polarized light microscopy :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0013816 `BACK TO TOP `_ ------------ populationReceptiveFieldMapping ------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/populationReceptiveFieldMapping :@type: https://openminds.om-i.org/types/Technique :name: population receptive field mapping `BACK TO TOP `_ ------------ positronEmissionTomography -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/positronEmissionTomography :@type: https://openminds.om-i.org/types/Technique :name: positron emission tomography `BACK TO TOP `_ ------------ pressureInjection ----------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/pressureInjection :@type: https://openminds.om-i.org/types/Technique :definition: Pressure injection uses either air compression or mechanical pressure to eject a substance from a micropipette (from Veith et al., 2016; J.Vis.Exp. (109):53724; doi: 10.3791/53724). :name: pressure injection `BACK TO TOP `_ ------------ primaryAntibodyStaining ----------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/primaryAntibodyStaining :@type: https://openminds.om-i.org/types/Technique :name: primary antibody staining `BACK TO TOP `_ ------------ pseudoContinuousArterialSpinLabeling ------------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/pseudoContinuousArterialSpinLabeling :@type: https://openminds.om-i.org/types/Technique :name: pseudo-continuous arterial spin labeling `BACK TO TOP `_ ------------ psychologicalTesting -------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/psychologicalTesting :@type: https://openminds.om-i.org/types/Technique :definition: 'Psychological testing' is a psychometric measurement to evaluate a person's response to a psychological test according to carefully prescribed guidelines. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Psychological_testing)] :name: psychological testing `BACK TO TOP `_ ------------ pupillometry ------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/pupillometry :@type: https://openminds.om-i.org/types/Technique :definition: Pupillometry is the measurement of minute fluctuations in pupil diameter in response to a stimulus. :name: pupillometry `BACK TO TOP `_ ------------ quantification -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/quantification :@type: https://openminds.om-i.org/types/Technique :name: quantification `BACK TO TOP `_ ------------ quantitativeMagneticResonanceImaging ------------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/quantitativeMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: Any magnetic resonance imaging technique that generates images of a specimen based on the physical parameters of the local tissue microstructural environment. :name: quantitative magnetic resonance imaging `BACK TO TOP `_ ------------ quantitativeSusceptibilityMapping --------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/quantitativeSusceptibilityMapping :@type: https://openminds.om-i.org/types/Technique :definition: MRI technique, where the voxel intensity is linear proportional to the underlying tissue [adapted from [Wikipedia](https://en.wikipedia.org/wiki/Quantitative_susceptibility_mapping)]. :name: quantitative susceptibility mapping `BACK TO TOP `_ ------------ receptiveFieldMapping --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/receptiveFieldMapping :@type: https://openminds.om-i.org/types/Technique :definition: In 'receptive field mapping' a distinct set of physiological stimuli is used to evoke a sensory neuronal response in specific organisms to define its respective sensory space (receptive field). :name: receptive field mapping `BACK TO TOP `_ ------------ reporterGeneBasedExpressionMeasurement -------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/reporterGeneBasedExpressionMeasurement :@type: https://openminds.om-i.org/types/Technique :name: reporter gene based expression measurement `BACK TO TOP `_ ------------ reporterProteinBasedExpressionMeasurement ----------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/reporterProteinBasedExpressionMeasurement :@type: https://openminds.om-i.org/types/Technique :name: reporter protein based expression measurement `BACK TO TOP `_ ------------ retinotopicMapping ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/retinotopicMapping :@type: https://openminds.om-i.org/types/Technique :definition: In 'retinotopic mapping' the retina is repeatedly stimulated in such a way that the response of neurons, particularly within the visual stream, can be mapped to the location of the stimulus on the retina. :name: retinotopic mapping `BACK TO TOP `_ ------------ retrogradeTracing ----------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/retrogradeTracing :@type: https://openminds.om-i.org/types/Technique :definition: Retrograde tracing is a technique used to trace neural connections from their point of termination (the synapse) to their source (the cell body). :description: In 'retrograde tracing' a tracer substance is taken up by synaptic terminals (and sometimes by axons) of neurons in the region where it is injected. Retrograde tracing techniques allow for a detailed assessment of neuronal connections between a target population of neurons and their inputs throughout the nervous system. :name: retrograde tracing `BACK TO TOP `_ ------------ rule-basedModeling ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/rule-basedModeling :@type: https://openminds.om-i.org/types/Technique :name: rule-based modeling `BACK TO TOP `_ ------------ scanningElectronMicroscopy -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/scanningElectronMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Scanning electron microscopy is a microscopy technique to produce images of a specimen by scanning the surface with focused beam of electrons. :name: scanning electron microscopy :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739710 `BACK TO TOP `_ ------------ scatteredLightImaging --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/scatteredLightImaging :@type: https://openminds.om-i.org/types/Technique :name: scattered light imaging `BACK TO TOP `_ ------------ secondaryAntibodyStaining ------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/secondaryAntibodyStaining :@type: https://openminds.om-i.org/types/Technique :name: secondary antibody staining `BACK TO TOP `_ ------------ serialBlockFaceScanningElectronMicroscopy ----------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/serialBlockFaceScanningElectronMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Serial block face scanning electron microscopy is a serial section scanning electron microscopy technique where an ultramicrotome is used to remove the surface layer of a specimen. :name: serial block face scanning electron microscopy `BACK TO TOP `_ ------------ serialSectionTransmissionElectronMicroscopy ------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/serialSectionTransmissionElectronMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Serial section transmission electron microscopy is a microscopy technique in which a beam of electrons is transmitted through multiple successive slices of a volumetric sample to produce images of the slices (e.g. for later 3D reconstruction). :name: serial section transmission electron microscopy `BACK TO TOP `_ ------------ sharpElectrodeIntracellularElectrophysiology -------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/sharpElectrodeIntracellularElectrophysiology :@type: https://openminds.om-i.org/types/Technique :definition: An intracellular electrophysiology technique where a microelectrode/micropipette is used to measure electrical properties of a single cell, e.g. a neuron. :description: This technique uses a fine-tipped micropipette/microelectrode that is inserted into the neuron, allowing direct recording of electrical events generated by the neuron (membrane potential, resistance, time constant, synaptic potentials and action potentials). :name: sharp electrode intracellular electrophysiology :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739713 `BACK TO TOP `_ ------------ silverStaining -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/silverStaining :@type: https://openminds.om-i.org/types/Technique :definition: A technique where the appearance of biological subcellular targets (e.g. proteins, RNA or DNA) is selectively alter by use of silver. :description: Silver can be used to stain subcellular targets such as proteins, peptide, carbohydrates, RNA or DNA. This techniques is typically used on histological sections prior to light microscopy, for the detection of proteins and peptides in polyacrylamide gels or gel electrophoresis. :name: silver staining :preferredCrossReference: http://uri.neuinfo.org/nif/nifstd/nlx_152217 :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0110626 `BACK TO TOP `_ ------------ simulation ---------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/simulation :@type: https://openminds.om-i.org/types/Technique :name: simulation `BACK TO TOP `_ ------------ singleCellRNASequencing ----------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/singleCellRNASequencing :@type: https://openminds.om-i.org/types/Technique :name: single cell RNA sequencing `BACK TO TOP `_ ------------ singleElectrodeExtracellularElectrophysiology --------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/singleElectrodeExtracellularElectrophysiology :@type: https://openminds.om-i.org/types/Technique :name: single electrode extracellular electrophysiology `BACK TO TOP `_ ------------ singleElectrodeJuxtacellularElectrophysiology --------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/singleElectrodeJuxtacellularElectrophysiology :@type: https://openminds.om-i.org/types/Technique :name: single electrode juxtacellular electrophysiology `BACK TO TOP `_ ------------ singleGeneAnalysis ------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/singleGeneAnalysis :@type: https://openminds.om-i.org/types/Technique :definition: A 'single gene analysis' is a genetic test (sequencing technique) to check for any genetic changes in a specific gene. :name: single gene analysis `BACK TO TOP `_ ------------ singleNucleotidePolymorphismDetection ------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/singleNucleotidePolymorphismDetection :@type: https://openminds.om-i.org/types/Technique :definition: 'Single nucleotide polymorphism detection' refers to a group of techniques that are used to scan for new polymorphisms and to determine the allele(s) of a known polymorphism in target sequences (adapted from [Kwok and Chen, 2003](https://doi.org/10.21775/cimb.005.043)). :name: single nucleotide polymorphism detection :preferredOntologyIdentifier: http://edamontology.org/operation_0484 `BACK TO TOP `_ ------------ sodiumMRI --------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/sodiumMRI :@type: https://openminds.om-i.org/types/Technique :definition: 'Sodium MRI' is a specialised magnetic resonance imaging technique that uses strong magnetic fields, magnetic field gradients, and radio waves to generate images of the distribution of sodium in the body. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Sodium_MRI)] :name: sodium MRI `BACK TO TOP `_ ------------ sonography ---------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/sonography :@type: https://openminds.om-i.org/types/Technique :name: sonography `BACK TO TOP `_ ------------ standardization --------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/standardization :@type: https://openminds.om-i.org/types/Technique :definition: 'Standardization' is the process of providing (meta)data according to a consensus of different parties (e.g., firms, users, interest groups, organizations and governments). :name: standardization :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M0018674 `BACK TO TOP `_ ------------ stereoelectroencephalography ---------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/stereoelectroencephalography :@type: https://openminds.om-i.org/types/Technique :definition: In 'stereoelectroencephalography' depth electrodes (typically linear electrode arrays) are stereotactically implanted in the brain of a subject in order to record or stimulate electrographic activity of otherwise inaccessible brain regions. [cf. [wikipedia](https://en.wikipedia.org/wiki/Stereoelectroencephalography), or [Gholipour et al. 2020](https://doi.org/10.1016/j.clineuro.2019.105640)] :name: stereoelectroencephalography `BACK TO TOP `_ ------------ stereology ---------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/stereology :@type: https://openminds.om-i.org/types/Technique :definition: An imaging assay that is used for the three-dimensional interpretation of planar sections of materials or tissues. :name: stereology :preferredOntologyIdentifier: http://uri.interlex.org/ilx_0739729 `BACK TO TOP `_ ------------ stereotacticSurgery ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/stereotacticSurgery :@type: https://openminds.om-i.org/types/Technique :name: stereotactic surgery `BACK TO TOP `_ ------------ structuralMagneticResonanceImaging ---------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/structuralMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that uses strong magnetic fields, magnetic field gradients, and radio waves to generate images with static information of the scanned body. :name: structural magnetic resonance imaging `BACK TO TOP `_ ------------ structuralNeuroimaging ---------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/structuralNeuroimaging :@type: https://openminds.om-i.org/types/Technique :name: structural neuroimaging `BACK TO TOP `_ ------------ subcutaneousInjection --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/subcutaneousInjection :@type: https://openminds.om-i.org/types/Technique :definition: An 'subcutenous injection' is the administration of a substance under all the layers of the skin via a needle or tube. :name: subcutaneous injection `BACK TO TOP `_ ------------ subduralElectrocorticography ---------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/subduralElectrocorticography :@type: https://openminds.om-i.org/types/Technique :name: subdural electrocorticography `BACK TO TOP `_ ------------ superResolutionMicroscopy ------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/superResolutionMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Techniques in optical microscopy that allow images to have resolutions higher than those imposed by the diffraction limit, due to the diffraction of light [taken from [Wikipedia](https://en.wikipedia.org/wiki/Super-resolution_microscopy)]. :name: super resolution microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739445 `BACK TO TOP `_ ------------ susceptibilityWeightedImaging ----------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/susceptibilityWeightedImaging :@type: https://openminds.om-i.org/types/Technique :definition: MRI sequence, used with fully flow compensated, long echo, gradient recalled echo (GRE) pulse sequence. Acquires images sensitive to venous blood, hemorrhage and iron storage. [adapted from [Wikipedia](https://en.wikipedia.org/wiki/Susceptibility_weighted_imaging)]. :name: susceptibility weighted imaging `BACK TO TOP `_ ------------ tetrodeExtracellularElectrophysiology ------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/tetrodeExtracellularElectrophysiology :@type: https://openminds.om-i.org/types/Technique :name: tetrode extracellular electrophysiology `BACK TO TOP `_ ------------ time-of-flightMagneticResonanceAngiography ------------------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/time-of-flightMagneticResonanceAngiography :@type: https://openminds.om-i.org/types/Technique :definition: 'Time-of-flight magnetic resonance angiography' is a non-invasive, non-contrast-enhanced technique used to visualize both arterial and venous vessels with high spatial resolution. Note: it provides no information regarding directionality nor flow velocity quantification. [adapted from: [Ferreira and Ramalho, 2013](https://doi.org/10.1002/9781118434550.ch7)] :name: time-of-flight magnetic resonance angiography `BACK TO TOP `_ ------------ tissueClearing -------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/tissueClearing :@type: https://openminds.om-i.org/types/Technique :name: tissue clearing `BACK TO TOP `_ ------------ tractTracing ------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/tractTracing :@type: https://openminds.om-i.org/types/Technique :name: tract tracing `BACK TO TOP `_ ------------ transcardialPerfusionFixationTechnique -------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/transcardialPerfusionFixationTechnique :@type: https://openminds.om-i.org/types/Technique :definition: Transcardial perfusion fixation is a technique to distribute fixatives throughout tissue via the heart. :name: transcardial perfusion fixation technique `BACK TO TOP `_ ------------ transcardialPerfusionTechnique ------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/transcardialPerfusionTechnique :@type: https://openminds.om-i.org/types/Technique :definition: Transcardial perfusion is a technique to distribute fluid throughout tissue via the heart. :name: transcardial perfusion technique :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739695 `BACK TO TOP `_ ------------ transmissionElectronMicroscopy ------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/transmissionElectronMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Transmission electron microscopy is a microscopy technique in which a beam of electrons is transmitted through a specimen to produce an image. :name: transmission electron microscopy `BACK TO TOP `_ ------------ twoPhotonFluorescenceMicroscopy ------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/twoPhotonFluorescenceMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: Two-photon fluorescence microscopy is a fluorescence microscopy technique for living tissue which is based on the simultaneous excitation by two photons with longer wavelength than the emitted light. :name: two-photon fluorescence microscopy :preferredOntologyIdentifier: http://uri.interlex.org/base/ilx_0739658 `BACK TO TOP `_ ------------ ultraHighFieldFunctionalMagneticResonanceImaging ------------------------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/ultraHighFieldFunctionalMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that generates multiple images over time of some physiological processes of a specimen typically employing a magnetic field strength of 7 Tesla (or higher). :name: ultra high-field functional magnetic resonance imaging `BACK TO TOP `_ ------------ ultraHighFieldMagneticResonanceImaging -------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/ultraHighFieldMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: Any medical imaging technique that typically uses a magnetic field strength of 7 Tesla (or higher) to generate images of a specimen based on the principle of nuclear magnetic resonance. :name: ultra high-field magnetic resonance imaging `BACK TO TOP `_ ------------ ultraHighFieldMagneticResonanceSpectroscopy ------------------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/ultraHighFieldMagneticResonanceSpectroscopy :@type: https://openminds.om-i.org/types/Technique :definition: 'Ultra high-field magnetic resonance spectroscopy' comprises all MRS techniques conducted with a MRI scanner with a magnetic field strength equal or above 7 Tesla. :name: ultra high-field magnetic resonance spectroscopy `BACK TO TOP `_ ------------ ultraHighFieldStructuralMagneticResonanceImaging ------------------------------------------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/ultraHighFieldStructuralMagneticResonanceImaging :@type: https://openminds.om-i.org/types/Technique :definition: A magnetic resonance imaging technique that typically uses a magnetic field strength of 7 Tesla (or higher) to generate images with static information of the scanned body. :name: ultra high-field structural magnetic resonance imaging `BACK TO TOP `_ ------------ vibratomeSectioning ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/vibratomeSectioning :@type: https://openminds.om-i.org/types/Technique :name: vibratome sectioning `BACK TO TOP `_ ------------ video-oculography ----------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/video-oculography :@type: https://openminds.om-i.org/types/Technique :name: video-oculography `BACK TO TOP `_ ------------ videoTracking ------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/videoTracking :@type: https://openminds.om-i.org/types/Technique :name: video tracking `BACK TO TOP `_ ------------ virus-mediatedTransfection -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/virus-mediatedTransfection :@type: https://openminds.om-i.org/types/Technique :name: virus-mediated transfection `BACK TO TOP `_ ------------ voltageClamp ------------ .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/voltageClamp :@type: https://openminds.om-i.org/types/Technique :definition: 'Voltage clamp' comprises all experimental techniques in which the membrane potential (voltage) is constantly changed to a desired value by adding the necessary current to the cell. :name: voltage clamp `BACK TO TOP `_ ------------ voltageSensitiveDyeImaging -------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/voltageSensitiveDyeImaging :@type: https://openminds.om-i.org/types/Technique :definition: 'Voltage sensitive dye imaging' is an experimental technique to measure neuronal population activity from in vivo brains or live brain slices by transducing changes in the cell membrane potential into changes of fluorescence emission by an employed exogenous chemical agent. :name: voltage sensitive dye imaging `BACK TO TOP `_ ------------ weightedCorrelationNetworkAnalysis ---------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/weightedCorrelationNetworkAnalysis :@type: https://openminds.om-i.org/types/Technique :definition: Weighted correlation network analysis is a widely used data mining method for studying networks based on pairwise correlations between variables. While it can be applied to most high-dimensional data sets, it has been most widely used in genomic applications. [adopted from: [wikipedia](https://en.wikipedia.org/wiki/Weighted_correlation_network_analysis)] :name: weighted correlation network analysis `BACK TO TOP `_ ------------ wholeCellPatchClamp ------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/wholeCellPatchClamp :@type: https://openminds.om-i.org/types/Technique :definition: 'Whole cell patch clamp' is a patch clamp technique where the pipette is sealed onto a cell membrane applying enough suction to rupture the membrane patch in order to provide access from the interior of the pipette to the intracellular space of the cell. :name: whole cell patch clamp `BACK TO TOP `_ ------------ wholeGenomeSequencing --------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/wholeGenomeSequencing :@type: https://openminds.om-i.org/types/Technique :definition: 'Whole genome sequencing' is a genetic test (sequencing technique) to determine the entire, or nearly the entire, DNA sequence of an organism's genome at a single time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Whole_genome_sequencing)] :name: whole genome sequencing :preferredOntologyIdentifier: http://id.nlm.nih.gov/mesh/2018/M000621306 `BACK TO TOP `_ ------------ widefieldFluorescenceMicroscopy ------------------------------- .. admonition:: metadata sheet :@context: @vocab: :@id: https://openminds.om-i.org/instances/technique/widefieldFluorescenceMicroscopy :@type: https://openminds.om-i.org/types/Technique :definition: 'Widefield fluorescence microscopy' comprises all microscopy techniques in which fluorescent molecules of an entire sample are excited through a permanent exposure of a light source of a specific wavelength. :name: widefield fluorescence microscopy `BACK TO TOP `_ ------------